TARIS-Dendrogram Build dendrograms, loading a similarity matrix previously generated with TARIS-Matrices. The output file is an image in PNG format Depends on:   1) R ( >= 2.4)       The R Project for Statistical Computing       http://www.r-project.org       In order to install in debian linux :       $ apt-get install r-base   2) ade4 ( >= 1.4 )       Analysis of Ecological Data :       Exploratory and Euclidean methods in Environmental sciences       http://cran.r-project.org/web/packages/ade4/index.html       In order to install in any linux distribution:       $ wget http://cran.r-project.org/src/contrib/ade4_1.4-9.tar.gz       $ tar xvfz ade4_1.4-9.tar.gz       $ su         Password:       # R CMD INSTALL ade4 Syntax:    TARIS-Dendrogram -i file [PARAMETERS] Required parameters:    -i   file            This is the name of the file containing the similarity            matrix produced by TARIS-Matrices Optional parameters:    -o   output            Name of the output dendrogram in .png format            (default=output.png)    -m   method            The clustering method to be used for the dendrogram            construction. The available clustering methods are: ward,            single, complete, average, mcquitty, median or centroid            (default=average)    -w   width            The ouput file image width            (default=800)    -h   height            The ouput file image height            (default=600) For example:    $ find . -name "*.cube" > list    $ TARIS-Matrices -i list -m similarity -o matrix.dat    $ TARIS-Dendrogram -i matrix.dat -o output.png